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Prediction Error Estimation A Comparison Of Sampling Methods

I don't know of specific references. Medical Data Analysis, 26–28. Stochastic REML algorithms [e.g. [9]] can be improved in terms of speed of calculation using these formulations, therefore allowing variance components to be estimated using REML in large data sets. Full-text · Article · Apr 2016 Fabian ZehnerChristine SälzerFrank GoldhammerRead full-textShow moreRecommended publicationsArticleA hybrid approach for learning concept hierarchy from Malay text using artificial immune networkOctober 2016 · Natural Computing · weblink

share|improve this answer edited Nov 14 '11 at 21:03 whuber♦ 146k18285545 answered Nov 14 '11 at 16:25 topepo 3,2501014 6 +1 Impressive set of references. –whuber♦ Nov 14 '11 at PEVAF1, PEVAF2, PEVAF3, and PEVAF4 are alternative versions of these formulations, which rescale the formulations from the Var (u) and to the σ g 2 [email protected]@[email protected]@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaa[email protected][email protected] in order to account for Specifically I want to do linear regression using ML on data with unknown non Gaussian noise. –sebhofer Oct 10 at 2:57 add a comment| up vote 7 down vote My understanding Garcia-Cortes et al. [10] suggest weighting by asymptotic approximations of the sampling variances. http://www.ncbi.nlm.nih.gov/pubmed/15905277

Kim, J.-H. (2009). Using six of these PC's the accuracy of estimated breeding values for the Irish data set could be estimated in less than 38.1 h. JaradatAbdul Razak Hamdan+1 more author…Mohd Zakree Ahmad NazriRead moreConference PaperClonal Selection Algorithm for Learning Concept Hierarchy from Malay TextOctober 2016Mohd Zakree Ahmad NazriSiti Mariyam ShamsuddinAzuraliza Abu BakarRead moreConference PaperAutomatic Part of Alternatively Monte Carlo sampling can be used to calculate approximations of the prediction error variance, which converge to the true values if enough samples are used.

  1. The system returned: (22) Invalid argument The remote host or network may be down.
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  3. ConclusionPEV approximations using Monte Carlo estimation were affected by the formulation used to calculate the PEV.
  4. The cross-validation or jackknife mean will be the same as the sample mean, whereas the bootstrap mean is very unlikely to be the same as the sample mean.
  5. Bias in estimating the variance of k-fold cross-validation.
  6. Alternative weighting strategies Of the formulations presented in Table 1, PEVGC3 and PEVAF3 are weighted averages of PEVGC1 and PEVGC2 and of PEVAF1 and PEVAF2 respectively with the weighting dependent on
  7. It was modified to calculate the covariances between X and Y by changing [ ( T n − 1 n − 1 ) − x i ] 2 [email protected]@[email protected]@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaWaamWaaeaadaqadaqcfayaamaaliaabaGaemivaq1aaSbaaeaacqWGUbGBcqGHsislcqaIXaqmaeqaaaqaaiabd6gaUjabgkHiTiabigdaXaaaaOGaayjkaiaawMcaaiabgkHiTiabdIha4naaBaa[email protected][email protected] to [
  8. The Var( u ^ [email protected]@[email protected]@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0x[email protected][email protected] ) ≠ Cov(u, u ^ [email protected]@[email protected]@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0x[email protected][email protected] ) when the Cov((u - u ^ [email protected]@[email protected]@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0x[email protected][email protected] ), u ^ [email protected]@[email protected]@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0x[email protected][email protected] ) ≠ 0.
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In these small samples, leave-one-out cross-validation (LOOCV), 10-fold cross-validation (CV) and the .632+ bootstrap have the smallest bias for diagonal discriminant analysis, nearest neighbor and classification trees. PEVGC3, PEVAF3, PEVAF4, and PEVNF2 were the best formulations across all of the ten formulations. These formulations gave good approximations at both high and low PEVexact their performance was less good at intermediate PEV, measured by each of the summary statistics (Table 2).Table 2 Intercept, slope, M. (2005).

Online ISSN 1460-2059 - Print ISSN 1367-4803 Copyright ©  2016 Oxford University Press Oxford Journals Oxford University Press Site Map Privacy Policy Cookie Policy Legal Notices Frequently Asked Questions Other Oxford University M. CV tends to be less biased but K-fold CV has fairly large variance. http://stats.stackexchange.com/questions/18348/differences-between-cross-validation-and-bootstrapping-to-estimate-the-predictio Journal of the American Statistical Association, 316–331.

LOOCV and 10-fold CV have the smallest bias for linear discriminant analysis. Oblique.tree proved to be affected by prevalence and it does not include the possibility of weighting the observations, which potentially discourage its actual use. share|improve this answer answered Nov 14 '11 at 16:19 Glen 3,56211938 thanks lot for the answers. PEVFL and PEVAF4 make use of information on the Cov(u, u ^ [email protected]@[email protected]@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0x[email protected][email protected] ). Figure 3 X-Y plot of the exact prediction error variance and the Var( u ^ [email protected]@[email protected]@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0x[email protected][email protected]

Tibshirani, RJ, & Tibshirani, R. (2009). http://www.sciencedirect.com/science/article/pii/S0169743909000422 NCBISkip to main contentSkip to navigationResourcesAll ResourcesChemicals & BioassaysBioSystemsPubChem BioAssayPubChem CompoundPubChem Structure SearchPubChem SubstanceAll Chemicals & Bioassays Resources...DNA & RNABLAST (Basic Local Alignment Search Tool)BLAST (Stand-alone)E-UtilitiesGenBankGenBank: BankItGenBank: SequinGenBank: tbl2asnGenome WorkbenchInfluenza VirusNucleotide For example, PEVGC2 converged at a slower rate than all other formulations when the convergence rate was measured by the correlation between PEVexact and sampled PEV (Fig. 1). Your cache administrator is webmaster.

Of the four, two, PEVGC3 and PEVAF3, were weighted averages of component formulations. http://fapel.org/prediction-error/prediction-error-estimation.php Set up and solve the mixed model equations for the data set using the n simulated samples of y instead of the true y. Assuming a simple additive genetic animal model without genetic groups y = Xb + Zu + e, where the distribution of random variables is y ~ N(Xb, ZGZ' + R), u Variance is very low for this method and the bias isn't too bad if the percentage of data in the hold-out is low.

ResultsAs the σ g 2 [email protected]@[email protected]@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaa[email protected][email protected] was taken to be 1.0, the PEV ranged between 0.00 and 1.0. The slopes and R2 of their regressions were always among the best where PEVexact was low, intermediate, or high (Table 2). The methods used are Regression Trees, Projection Pursuit Regression and Neural Networks. http://fapel.org/prediction-error/prediction-error-estimation-a-comparison.php The objective function corresponded to the maximisation of the true skill statistic (TSS) following a repeated k-fold scheme (Borra and Di Ciaccio, 2010 ).

Four formulations were competitive and these made use of information on either the variance of the estimated breeding value and on the variance of the true breeding value minus the estimated Prediction error estimation: a comparison of resampling methods. Although carefully collected, accuracy cannot be guaranteed.

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Several samples can be solved simultaneously on multiple processors thereby reducing computer time. Statistics in Medicine, 26(29), 5320–5334. Although the use of evtree did not suggest a major improvement compared with the remaining packages, it allowed the development of regression trees which may be informative for additional modelling tasks The different formulations had different convergence rates and these were shown to depend on the number of samples and on the level of prediction error variance.

PEVGC1 and its corresponding alternative formulation PEVAF1 make use of information on the Var( u ^ [email protected]@[email protected]@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0x[email protected][email protected] ). I thought bootstrapping was better when you have small data set (<30 obs). Find the super palindromes! this content The system returned: (22) Invalid argument The remote host or network may be down.

Application of an algorithm controlling the variance of response to selection [24] to large data sets can be speeded up. Stochastic approximations of the sampling variance of the sampled PEV were calculated using 100 independent replicates of the n samples, and using the leave-one-out Jackknife on n samples, for the different The system returned: (22) Invalid argument The remote host or network may be down. doi:10.1016/j.csda.2009.04.009 Kohavi, R. (1995).

We implemented and integrated baseline methods of natural language processing and statistical modelling by means of software components that are available under open licenses. There is an introduction to these concepts (plus permutation tests) using R at http://www.burns-stat.com/pages/Tutor/bootstrap_resampling.html share|improve this answer edited Nov 14 '11 at 21:04 whuber♦ 146k18285545 answered Nov 14 '11 at 15:55 Generated Mon, 24 Oct 2016 12:31:26 GMT by s_wx1157 (squid/3.5.20) Do these physical parameters seem plausible?

Search for related content PubMed PubMed citation Articles by Molinaro, A. One of the goals of these studies is to build classifiers to predict the outcome of future observations. Textbook updating algorithms to calculate the variance can be numerically unreliable [19]. Small sample statistics for classification error rates I: Error rate measurements.